Manganese in the structure of TN5 Transposase: 20MER Outside End 2 Mn Complex (pdb 1mur)

The binding sites of Manganese atom in the structure of TN5 Transposase: 20MER Outside End 2 Mn Complex (pdb code 1mur). This binding sites where shown with 5.0 Angstroms radius around Manganese atom. The 1mur structure was solved by J.B.THODEN, H.M.HOLDEN, S.LOVELL, I.Y.GORYSHIN, W.R.REZNIKOFF, I.RAYMENT, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-2.5 Space group P6522 a (A) 112.400 b (A) 112.400 c (A) 232.800 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) n/a Rfree (%) n/a Manganese Binding Sites: Manganese binding site 1 out of 1 in 1mur Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Manganese in the PDB 1mur. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Manganese atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Dg20, B: Da21, A: Asp97, A: Thr98, A: Asp188, A: Arg322, A: Glu326, A: Hoh636, A: Hoh637, A: Hoh638, conact list: Atom Atom Distance (A) Mn OP1 B:Dg20 4.60 Mn C3' B:Dg20 4.58 Mn O3' B:Dg20 4.80 Mn C5' B:Dg20 4.41 Mn C4' B:Dg20 4.97 Mn O5' B:Dg20 4.59 Mn OP2 B:Da21 3.13 Mn P B:Da21 4.53 Mn CB A:Asp97 4.35 Mn OD2 A:Asp97 2.02 Mn OD1 A:Asp97 3.21 Mn CG A:Asp97 2.99 Mn O A:Thr98 4.10 Mn OD2 A:Asp188 4.23 Mn NH2 A:Arg322 4.83 Mn NH1 A:Arg322 4.18 Mn OE1 A:Glu326 2.78 Mn OE2 A:Glu326 2.48 Mn CD A:Glu326 2.97 Mn CG A:Glu326 4.43 Mn O A:Hoh636 2.61 Mn O A:Hoh637 1.49 Mn O A:Hoh638 1.54 interactive model: